Matrix completion

Functions to complete Euclidean (squared) distance matrices

edmc()

Euclidean Distance Matrix Completion

dpf()

Dissimilarity Parameterization Formulation

grs()

Guided Random Search

npf()

Nonparametric Position Formulation

sdp()

Semi-Definite Programming Algorithm

snl()

Sensor Network Localization

Point configurations

Produced from complete Euclidean (squared) distance matrix

getConfig()

Create a Point Configuration from a Distance Matrix

rgrs()

Relaxed Guided Random Search

Minimal spanning tree functions

Miscellaneous algorithms related to mst

mst()

Compute Minimum Spanning Tree

mstLB()

Minimum Spanning Tree Preserving Lower Bound

mstUB()

Shortest Path Upper Bound

primPath()

Minimum Spanning Tree Path

Matrix conversion

Functions to convert from and to Euclidean (squared) distance matrices

edm2gram()

Linear Matrix Operator

gram2edm()

Linear Matrix Operator

edm2psd()

Linear Matrix Operator

psd2edm()

Linear Matrix Operator

Matrix functions

Miscellaneous functions on matrices

colamdR()

Column Approximate Minimum Degree Permutation

Special problems

Methods for specialized problems in the literature

sprosr()

Semidefinite Programming-based Protein Structure Determination

snl()

Sensor Network Localization

Data

Data used in various examples

A

Molecule Metadata

sprosr_aco

Demo Data - ACO

sprosr_seq

Demo Data - SEQ

sprosr_upl

Demo Data - UPL